Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2037093 chr3:80574143 T/A 6.66E-5 177 19.53 24.03 27.2 KM Plot
PCPG rs2037094 chr3:80598101 A/G 7.96E-5 174 19.53 24.03 27.4 KM Plot
PCPG rs2039744 chr1:236896619 C/T 0.000321 174 24.85 25.53 10.3 KM Plot
PCPG rs2046446 chr6:123124386 G/A 3.53E-6 177 8.67 27.27 24.85 KM Plot
PCPG rs2049778 chr3:80598429 T/G 0.00013 176 19.87 24.53 27.4 KM Plot
PCPG rs2062584 chr3:193586088 C/T 0.000329 178 25.53 26.62 7.2 KM Plot
PCPG rs2066807 chr12:56740682 C/G 9.68E-8 177 25.17 29.13 9.98 KM Plot
PCPG rs2066818 chr12:56753822 C/A 9.85E-8 177 25.35 27.33 9.98 KM Plot
PCPG rs2066819 chr12:56750204 C/T 9.85E-8 177 25.35 27.33 9.98 KM Plot
PCPG rs2074903 chr16:89811663 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2074904 chr16:89811546 A/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2074963 chr16:89877269 T/C 0.000179 174 25.87 21.5 36.37 KM Plot
PCPG rs207906 chr2:217012901 A/G 6.98E-5 175 2.93 25.17 25.4 KM Plot
PCPG rs2097520 chr1:9331973 C/G 1.73E-5 178 6.85 20.47 26.57 KM Plot
PCPG rs2098029 chr14:74427405 C/T 3.77E-6 176 25.4 29.7 10.3 KM Plot